plugins

config.json

@@ -1,53 +1,89 @@
 {
-    "system":{
-        "logo":"www/parser/_images/cog-red.png","context":"", "theme":"oss.css",
-        "app":{
-            
-        "debug":true,"port":8000},
-        "version":0.6,"mode":"portal",
-        "source":{
-            "id":"cloud",
-            "auth":"nextcloud-auth.json",
-            "store":"/home/steve/git/sites/parser/store-auth.json"      
-       },
-       "routes":{
-            "data-transport":{
-                "menu":"tools",
-                "path":"/home/steve/git/sites/data-transport/config.json"
+  "system": {
+    "logo": "www/parser/_images/cog-red.png",
+    "context": "",
+    "theme": "oss.css",
+    "app": {
+      "debug": true,
+      "port": 8000
+    },
+    "version": 0.6,
+    "mode": "portal",
+    "source": {
+      "id": "cloud",
+      "auth": "nextcloud-auth.json",
+      "store": "/home/steve/git/sites/parser/store-auth.json",
+      "key": "/home/steve/dev/data/qcms/parser.json"
+    },
+    "routes": {
+      "data-transport": {
+        "menu": "tools",
+        "path": "/home/steve/git/sites/data-transport/config.json"
+      },
+      "privacykit": {
+        "menu": "tools",
+        "path": "/home/steve/git/sites/privacykit/config.json"
       }
     }
-        
-    
-    },
-    "plugins":{
-        "store":["init","plans"],
-        "users":["signup"]
-    },
-    "layout":{
-        "header":{"title":"{x12} Parser :: Healthcare/IO","logo":true,"subtitle":"Open, Simple & Extensible - Powered by data-transport"},
-        "icons":[],
-        "root":"www/parser",
-        "index":"index.html",
-        "order":{
-            "menu":["tools","resources","about"]
-        },
-        "overwrite":{
-            "license":{
-                "title":"MIT License",
-                "text":"license",
+  },
+  "plugins": {
+    "store": ["init","plans","version"
+    ],
+    "users": [
+      "signup"
+    ]
+  },
+  "layout": {
+    "header": {
+      "title": "{x12} Parser :: Healthcare/IO",
+      "logo": true,
+      "subtitle": "Open, Simple & Extensible - Powered by data-transport"
+    },
+    "icons": [],
+    "root": "www/parser",
+    "index": "index.html",
+    "order": {
+      "menu": ["tools","tutorials", "about"
+      ]
+    },
+    "overwrite": {
+      "1-parse":{
+        "text":"{12} Parsing", "title":"{x12} Parsing","type":"dialog","uri":"www/parser/tutorials/1-parse.md"
+      },
+      "license": {
+        "title": "MIT License",
+        "text": "license",
+        "type": "dialog",
+        "uri": "www/parser/about/license.md"
+      },
+      "source-code": {
+        "text": "Source Code",
+        "type": "redirect",
+        "url": "https://hiplab.mc.vanderbilt.edu/git/hiplab/parser.git"
+      },
+      "change-database":{
+        "title":"Change Database",
+        "text":"change database",
         "type":"dialog",
-                "uri":"www/parser/about/license.md"
+        "uri":"www/parser/tutorials/change-database.md"
       },
-            "source-code":{
-                "text":"Source Code",
-                "type":"redirect",
-                "url":"https://hiplab.mc.vanderbilt.edu/git/hiplab/parser.git"
+      "embed-in-code":{
+        "title":"embed in code","text":"{x12} Import Library","type":"dialog","uri":"www/parser/tutorials/embed-in-code.md"
       },
-            "credit":{
-                "title":"{x12} Parser Credit",
-                "type":"dialog","uri":"www/parser/about/credit.html"
+      "export-data":{"title":"Export Data","text":"Export Data","type":"dialog","uri":"www/parser/tutorials/export-data.md"},
+      "credit": {
+        "title": "{x12} Parser Credit",
+        "type": "dialog",
+        "uri": "www/parser/about/credit.html"
       }
     },
-        "footer":[{"text":"Health Information Privacy Laboratory"},{"text":"Powered By - QCMS"}]
+    "footer": [
+      {
+        "text": "Health Information Privacy Laboratory"
+      },
+      {
+        "text": "Powered By - QCMS"
+      }
+    ]
   }
 }

www/parser/_plugins/store.py

@@ -3,6 +3,7 @@ import stripe
 import json
 import os
 import pandas as pd
+import healthcareio
 
 def copyright(**_args):
     return [store.__name__,store.__version__]
@@ -23,9 +24,10 @@ def plans (**_args) :
     """
     This function will return plans associated with a product
     """
+    _config = _args['config']
     if not store.isready() :
         print (['Initializing Store'])
-        init(**_args)
+        init(config = _config)
 
     _plans = store.get.plans('healthcareio')
     _df = {}
@@ -44,10 +46,13 @@ def plans (**_args) :
     return _df.to_json()
 
 def signup (**_args):  
-    _email = _args['email']
-    _name = None if 'name' in _args else _args['name']
+    _request = _args['request'] 
+    _email = _request.headers['email']
+    _name = None if 'name' in _request.headers else _request.headers['name']
     product = store.get.product('healthcareio')
     #
     # If the user is already signed up
     customer = store.get.customer(_email)
     
+def version (**_args):
+    return str(healthcareio.meta.__version__)

www/parser/_plugins/users.py

@@ -19,9 +19,11 @@ def signup(**_args):
     """
     This function creates or pulls a customer's key from the backend (stripe)
     """
+    _config = _args['config']
+    _request= _args['request']
     if not store.isready() :
-        __init__(**_args)
-    _email = _args['email']
+        __init__(config = _config)
+    _email = _request.headers['email']
     _customer = store.get.customer(_email)
     _user = {}
     if not _customer :
@@ -40,7 +42,6 @@ def signup(**_args):
         _user['token'] = _customer['id']
 
     return json.dumps(_user)
-
 def upgrade (**_args):
     pass    
     

www/parser/_plugins/utils.py

@@ -0,0 +1,13 @@
+"""
+
+"""
+import transport
+_QUERY = {
+    "missing_elements":{
+        transport.providers.SQLITE3:"select count(*) counts, date, json_extract(data,'$.element') element, json_extract(data,'$.anchor') qualifier from logs where action = 'missing-plugin' group by element, qualifier ",
+        transport.providers.MONGODB:{"mongo":{"aggregate":"x12logs"}},
+    }
+}
+def query(**_args):
+    _request = _args['request']
+