bug fix ...

pull/1/head
Steve L. Nyemba 4 years ago
parent 687ffec215
commit afcc5ed690

@ -8,12 +8,12 @@ def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read()
args = {
"name":"data-transport",
"version":"1.3.8",
"version":"1.3.8.1",
"author":"The Phi Technology LLC","author_email":"info@the-phi.com",
"license":"MIT",
"packages":["transport"]}
args["keywords"]=['mongodb','couchdb','rabbitmq','file','read','write','s3','sqlite']
args["install_requires"] = ['pymongo','numpy','cloudant','pika','boto','google-cloud-bigquery','flask-session','smart_open','botocore','psycopg2-binary','mysql-connector-python']
args["install_requires"] = ['pymongo','numpy','cloudant','pika','boto3','boto','pyarrow','google-cloud-bigquery','google-cloud-bigquery-storage','flask-session','smart_open','botocore','psycopg2-binary','mysql-connector-python']
args["url"] = "https://healthcareio.the-phi.com/git/code/transport.git"
if sys.version_info[0] == 2 :

@ -18,9 +18,13 @@ else:
from common import Reader,Writer
import json
from google.oauth2 import service_account
from google.cloud import bigquery as bq
from multiprocessing import Lock
import pandas as pd
import numpy as np
import copy
class SQLRW :
PROVIDERS = {"postgresql":"5432","redshift":"5432","mysql":"3306","mariadb":"3306"}
DRIVERS = {"postgresql":pg,"redshift":pg,"mysql":my,"mariadb":my}
@ -177,9 +181,32 @@ class SQLWriter(SQLRW,Writer):
pass
class BigQuery:
def __init__(self,**_args):
path = _args['service_key']
path = _args['service_key'] if 'service_key' in _args else _args['private_key']
self.credentials = service_account.Credentials.from_service_account_file(path)
self.dataset = _args['dataset'] if 'dataset' in _args else None
self.path = path
def meta(self,**_args):
"""
This function returns meta data for a given table or query with dataset/table properly formatted
:param table name of the name WITHOUT including dataset
:param sql sql query to be pulled,
"""
#if 'table' in _args :
# sql = "SELECT * from :dataset."+ _args['table']" limit 1"
#else:
# sql = _args['sql']
# if 'limit' not in sql.lower() :
# sql = sql + ' limit 1'
#sql = sql.replace(':dataset',self.dataset) if ':dataset' in args else sql
#
# Let us return the schema information now for a given table
#
table = _args['table']
client = bq.Client.from_service_account_json(self.path)
ref = client.dataset(self.dataset).table(table)
return client.get_table(ref).schema
class BQReader(BigQuery,Reader) :
def __init__(self,**_args):
@ -196,7 +223,8 @@ class BQReader(BigQuery,Reader) :
SQL = "SELECT * FROM :table ".replace(":table",table)
if SQL and 'limit' in _args:
SQL += " LIMIT "+str(_args['limit'])
if (':dataset' in SQL or ':DATASET' in SQL) and self.dataset:
SQL = SQL.replace(':dataset',self.dataset).replace(':DATASET',self.dataset)
return pd.read_gbq(SQL,credentials=self.credentials,dialect='standard') if SQL else None
class BQWriter(BigQuery,Writer):
Lock = Lock()
@ -223,7 +251,14 @@ class BQWriter(BigQuery,Writer):
elif type(_info) == pd.DataFrame :
_df = _info
if '.' not in _args['table'] :
self.mode['destination_table'] = '.'.join([self.dataset,_args['table']])
else:
self.mode['destination_table'] = _args['table'].strip()
if 'schema' in _args :
self.mode['table_schema'] = _args['schema']
_mode = copy.deepcopy(self.mode)
_df.to_gbq(**self.mode) #if_exists='append',destination_table=partial,credentials=credentials,chunksize=90000)
pass

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