bug fix: write data

data/maker/__init__.py

@@ -380,18 +380,19 @@ class Generator (Learner):
                         
            
             _schema = self.get_schema()
-            _schema = [{'name':_item.name,'type':_item.field_type} for _item in _schema]
+            _schema = [{'name':_item.name,'type':(_item.field_type if has_attr(_item,'field_type') else 'VARCHAR(256)')} for _item in _schema]
             _df = self.format(_df,_schema)
             _log = [{"name":_schema[i]['name'],"dataframe":_df[_df.columns[i]].dtypes.name,"schema":_schema[i]['type']} for i in np.arange(len(_schema)) ]
             self.log(**{"action":"consolidate","input":_log})
 
             # w = transport.factory.instance(doc='observation',provider='mongodb',context='write',db='IOV01_LOGS',auth_file='/home/steve/dev/transport/mongo.json')
             # w.write(_df)
-            cols = [name for name in _df.columns if name.endswith('datetime')]
+            # cols = [name for name in _df.columns if name.endswith('datetime')]
+            
             # print (_df[cols])
             
             writer = transport.factory.instance(**_store)
-            writer.write(_df[cols],schema=[_item for _item in _schema if _item['name'] in cols])
+            writer.write(_df,schema=[_item for _item in _schema if _item['name'] in cols])
             
             
 

setup.py

@@ -4,7 +4,7 @@ import sys
 
 def read(fname):
     return open(os.path.join(os.path.dirname(__file__), fname)).read() 
-args = {"name":"data-maker","version":"1.5.4",
+args = {"name":"data-maker","version":"1.5.5",
         "author":"Vanderbilt University Medical Center","author_email":"steve.l.nyemba@vumc.org","license":"MIT",
         "packages":find_packages(),"keywords":["healthcare","data","transport","protocol"]}
 args["install_requires"] = ['data-transport@git+https://dev.the-phi.com/git/steve/data-transport.git','tensorflow']