{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "#### Writing to PostgreSQL\n", "\n", "1. Insure PostgreSQL is actually installed on the system, \n", "2. There is a database called demo created on the said system\n", "\n", "The cell below creates a dataframe that will be stored within postgreSQL" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "2.0.4\n" ] } ], "source": [ "#\n", "# Writing to PostgreSQL database\n", "#\n", "import transport\n", "from transport import providers\n", "import pandas as pd\n", "_data = pd.DataFrame({\"name\":['James Bond','Steve Rogers','Steve Nyemba'],'age':[55,150,44]})\n", "pgw = transport.get.writer(provider=providers.POSTGRESQL,database='demo',table='friends')\n", "pgw.write(_data,if_exists='replace') #-- default is append\n", "print (transport.__version__)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "#### Reading from PostgreSQL\n", "\n", "The cell below reads the data that has been written by the cell above and computes the average age within a PostreSQL (simple query). \n", "\n", "- Basic read of the designated table (friends) created above\n", "- Execute an aggregate SQL against the table\n", "\n", "\n", "**NOTE**\n", "\n", "By design **read** object are separated from **write** objects in order to avoid accidental writes to the database.\n", "Read objects are created with **transport.get.reader** whereas write objects are created with **transport.get.writer**" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ " name age\n", "0 James Bond 55\n", "1 Steve Rogers 150\n", "2 Steve Nyemba 44\n", "--------- STATISTICS ------------\n", " _counts avg\n", "0 3 83.0\n" ] } ], "source": [ "\n", "import transport\n", "from transport import providers\n", "pgr = transport.get.reader(provider=providers.POSTGRESQL,database='demo',table='friends')\n", "_df = pgr.read()\n", "_query = 'SELECT COUNT(*) _counts, AVG(age) from friends'\n", "_sdf = pgr.read(sql=_query)\n", "print (_df)\n", "print ('--------- STATISTICS ------------')\n", "print (_sdf)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "An **auth-file** is a file that contains database parameters used to access the database. \n", "For code in shared environments, we recommend \n", "\n", "1. Having the **auth-file** stored on disk \n", "2. and the location of the file is set to an environment variable.\n", "\n", "To generate a template of the **auth-file** open the **file generator wizard** found at visit https://healthcareio.the-phi.com/data-transport" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "{'host': 'klingon.io',\n", " 'port': 5432,\n", " 'username': 'me',\n", " 'password': 'foobar',\n", " 'provider': 'postgresql',\n", " 'database': 'demo',\n", " 'table': 'friends'}" ] }, "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ "{\n", " \"host\":\"klingon.io\",\"port\":5432,\"username\":\"me\",\"password\":\"foobar\", \"provider\":\"postgresql\",\n", " \"database\":\"demo\",\"table\":\"friends\"\n", "}" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.9.7" } }, "nbformat": 4, "nbformat_minor": 2 }