{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " skiping ...\n",
      " skiping ...\n",
      " skiping ...\n",
      " skiping ...\n",
      " skiping ...\n",
      " skiping ...\n",
      " skiping ...\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "2"
      ]
     },
     "execution_count": 6,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "\"\"\"\n",
    "    This notebook is designed to generate SQL syntax all the quasi-identifiers for the patients in the database\n",
    "    The resulting SQL will be run against bigquery to produce a table with every record mapping to a patient\n",
    "    \n",
    "\"\"\"\n",
    "\n",
    "from risk import *\n",
    "ihandle = UtilHandler(path='/home/steve/dev/google-cloud-sdk/accounts/curation-prod.json',dataset='combined20180822',key_field='person_id',key_table='person',filter=['person','observation'])\n",
    "r = ihandle.migrate_tables()\n",
    "len(r)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "u'              SELECT person.person_id , person.year_of_birth , person.month_of_birth , person.day_of_birth , person.birth_datetime , person.race_concept_id , person.ethnicity_concept_id , person.location_id , person.care_site_id , person.person_source_value , person.gender_source_value , person.gender_source_concept_id , person.race_source_value , person.ethnicity_source_value , basic_observation.sex_at_birth AS sex_at_birth1 , basic_observation.birth_date AS birth_date1 , basic_observation.race AS race1 , basic_observation.zip AS zip1 , basic_observation.city AS city1 , basic_observation.state AS state1 , basic_observation.gender AS gender1              FROM                                 (select * from deid_image.person ) as person                                   INNER JOIN                   (select * from deid_image.basic_observation ) as basic_observation              ON basic_observation.person_id = person.person_id                 '"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "ihandle = UtilHandler(path='/home/steve/dev/google-cloud-sdk/accounts/curation-test.json',dataset='deid_image',key_field='person_id',key_table='person',filter=['person','basic_observation'])\n",
    "ihandle.create_table().replace('\\n',' ')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
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