feature: added support for custom configuration

README.md

@@ -22,21 +22,7 @@ We wrote this frame to be used in both command line or as a library within in yo
     pip install --upgrade git+https://hiplab.mc.vanderbilt.edu/git/lab/parse-edi.git
 
 ## Usage 
-        cli:
-        
-            healthcare-io.py    --<[signup|init]> <email> --store <sqlite|mongo> [--batch <value>]
-            healthcare-io.py    --parse --folder <path> [--batch <value>] [--resume]
-            healthcare-io.py    --check-update
-        action :
-            --signup|init   signup user and get configuration file
-            --parse         starts parsing
-            --check         checks for updates
-        parameters :
-            --<[signup|init]>   signup or get a configuration file from a parsing server
-            --folder            location of the files (the program will recursively traverse it)
-            --store             data store mongo or sqlite or mongodb
-            --resume            will attempt to resume if there was an interruption
-
+ 
 **cli :**
 
 1. signup to get parsing configuration
@@ -50,12 +36,12 @@ We wrote this frame to be used in both command line or as a library within in yo
     Occasionally the attributes in the configuration file may change, This function will determine if there is a new version available.
 
         healthcare-io.py --check-update
-        
+
 3. parsing data in a folder
 
     The parser will recursively traverse a directory with claims and or remittances
 
-        healthcare-io.py --parse <claims|remits> --folder <path> [--batch <n>] [--resume]
+        healthcare-io.py --parse --folder <path> [--batch <n>] [--resume]
         
         with :
             --parse     tells the engine what to parse claims or remits

setup.py

@@ -8,14 +8,15 @@ import sys
 def read(fname):
     return open(os.path.join(os.path.dirname(__file__), fname)).read() 
 args = {
-    "name":"healthcareio","version":"1.4.4",
+    "name":"healthcareio","version":"1.4.6",
     "author":"Vanderbilt University Medical Center",
     "author_email":"steve.l.nyemba@vumc.org",
+    "include_package_data":True,
     "license":"MIT",
     "packages":find_packages(),
     "keywords":["healthcare","edi","x12","analytics","835","837","data","transport","protocol"]
 }
-args["install_requires"] = ['flask-socketio','seaborn','jinja2', 'weasyprint','data-transport@git+https://dev.the-phi.com/git/steve/data-transport.git','pymongo','numpy','cloudant','pika','boto','flask-session','smart_open','smart-top@git+https://dev.the-phi.com/git/steve/monitor.git@data-collector']
+args["install_requires"] = ['flask-socketio','seaborn','jinja2','jsonmerge', 'weasyprint','data-transport@git+https://healthcareio.the-phi.com/git/code/transport.git','pymongo','numpy','cloudant','pika','boto','botocore','flask-session','smart_open','smart-top@git+https://healthcareio.the-phi.com/git/code/smart-top.git@data-collector']
 args['url'] = 'https://hiplab.mc.vanderbilt.edu'
 args['scripts']= ['healthcareio/healthcare-io.py']
 # args['entry_points'] = {